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michael love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
6.1 years ago
cp1015
• 0
0
votes
4
replies
1.1k
views
DESeq2 Design Formula
DESeq2
michael love
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.6k
views
DESeq2 PCA plotting
deseq2
michael love
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
sam.far.7
• 0
1
vote
11
replies
2.3k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
Ashu
▴ 10
2
votes
3
replies
2.1k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
ap874
• 0
5
votes
10
replies
14k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
pvd2107
▴ 30
6 results • Page
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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