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michael love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
6.3 years ago
cp1015
• 0
0
votes
4
replies
1.1k
views
DESeq2 Design Formula
DESeq2
michael love
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.6k
views
DESeq2 PCA plotting
deseq2
michael love
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
sam.far.7
• 0
1
vote
11
replies
2.4k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
Ashu
▴ 10
2
votes
3
replies
2.2k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
ap874
• 0
5
votes
10
replies
14k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
pvd2107
▴ 30
6 results • Page
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Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
by
Nguyen
• 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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Gordon Smyth
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